Gènes puce 01-10-09

Species Markers / Regulatory Genes
Gene/Probe
Explanation
Glyceraldehyde 3-phosphate Dehydrogenase Resistance Genotype
Gene/Probe
Explanation
Methicillin, Oxacillin and all Beta-Lactams, defining MRSA
Beta Lactamase Repressor (Regulatory Protein) Aminoglycoside (Gentamicin, Tobramycin) Putative Fusidic Acid Resistance Protein Tetracyclin Efflux Protein (Putative Transport Protein) Phenicols, Lincosamides, Oxazolidinones (Linezolid), Pleuromutilins, Streptogramin A Putative Marker For Fosfomycin, Bleomycin Virulence Genotype
Gene/Probe
Explanation
Toxic Shock Syndrome Toxin, allele from bovine strains Enterotoxin -like Protein (ORF CM14 of U10927.2) Haemolysin Gamma, Component C, allele from ST22 and ST45 Leukocidin/Haemolysin Toxin Family Protein Leukocidin/Haemolysin Toxin Family Protein Leukocidin/Haemolysin Toxin Family Protein, allele from MRSA252 Hypothetical Protein similar to Haemolysin Haemolysin Delta (Amphiphylic Membrane Toxin) Putative Haemolysin III (other than RF122) Haemolysine Beta (Phospholipase C / un-truncated) Staphylococcal Complement Inhibitor (SCIN) Epidermal cell differentiation inhibitor A Epidermal cell differentiation inhibitor B Epidermal cell differentiation inhibitor C Aureolysin, allele from other than MRSA252 agr-Typing
Gene/Probe
Explanation
SCCmec-Typing
Gene/Probe
Explanation
Methicillin, Oxacillin and all Beta-Lactams, defining MRSA
Signal Transducer Protein MecR1 - truncated Methicillin-Resistance Regulatory Protein Glycerophosphoryl-diester-Phosphodiesterase (next to mecA) Cassette Chromosome Recombinase A, type 1 Cassette Chromosome Recombinase A, type 2 Cassette Chromosome Recombinase A, type 3 Cassette Chromosome Recombinase A, type ZH47 Cassette Chromosome Recombinase A, type 4 Cassette Chromosome Recombinase B, type 1 Cassette Chromosome Recombinase B, type 2 Cassette Chromosome Recombinase B, type 3 Cassette Chromosome Recombinase B, type 4 Sensor Histidine Kinase (Sensor Protein located in kdp operon) KDP Operon Transcriptional Regulatory Protein (DNA-binding Response Regulator) Hypothetical Protein Historical Name: CN050 Synonyms: dcs Capsule / Biofilm
Gene/Probe
Explanation
Capsular Polysaccharide Synthesis Enzyme CapH Capsule type 1 O-Antigen Polymerase CapJ Capsule Type 1 Capsular Polysaccharide Biosynthesis Protein CapK Capsule Type 1 Capsular Polysaccharide Synthesis Enzyme CapH Capsule type 5 O-Antigen Polymerase CapJ Capsule Type 5 Capsular Polysaccharide Biosynthesis Protein CapK Capsule Type 5 Capsular Polysaccharide Synthesis Enzyme CapH Capsule type 8 Capsular Polysaccharide Synthesis Enzyme CapI Capsule type 8 O-Antigen Polymerase CapJ Capsule Type 8 Capsular Polysaccharide Biosynthesis Protein CapK Capsule Type 8 Intercellular Adhesion Protein A (N-glycosyltransferase) Surface Protein Involved In Biofilm Formation MSCRAMMs / Adhaesion Factors
Gene/Probe
Explanation
Bone Sialoprotein-Binding Protein, allele from COL and MW2 Bone Sialoprotein-Binding Protein, allele from MRSA252 Bone Sialoprotein-Binding Protein, allele from Mu50 Bone Sialoprotein-Binding Protein, allele from RF122 Bone Sialoprotein-Binding Protein, allele from ST45 Clumping Factor A, allele from MU50 / MW2 Clumping Factor B, allele from COL / MU 50 Cell Wall Associated Fibronectin-Binding Protein Fibrinogen Binding Protein, allele from MRSA252 Cell Wall Associated Fibronectin-Binding Protein Cell Wall Associated Fibronectin-Binding Protein, allele from ST45 Cell Wall Associated Fibronectin-Binding Protein, allele from COL Fibronectin-Binding Protein A, allele from COL Fibronectin-Binding Protein A, allele from MRSA252 Fibronectin-Binding Protein A, allele from MU50 / MW2 Fibronectin-Binding Protein A, allele from RF122 Fibronectin-Binding Protein B, allele from COL / MU50 / MW2 Fibronectin-Binding Protein B, allele from MU50 Fibronectin-Binding Protein B, allele from MW2 Fibronectin-Binding Protein B, allele from ST15 Fibronectin-Binding Protein B, allele from ST45 Major Histocompatibility Complex Class II Analog Protein Major Histocompatibility Complex Class II Analog Protein, allele from RF122 Major Histocompatibility Complex Class II Analog Protein, allele from MRSA252 Major Histocompatibility Complex Class II Analog Protein, allele from MU50 / MW2 Ser-Asp Rich Fibrinogen-Binding, Bone Sialoprotein-Binding Protein C Ser-Asp Rich Fibrinogen-Binding, Bone Sialoprotein-Binding Protein C, allele from B1 Ser-Asp Rich Fibrinogen-Binding, Bone Sialoprotein-Binding Protein C, allele from COL Ser-Asp Rich Fibrinogen-Binding, Bone Sialoprotein-Binding Protein C, allele from MU50 Ser-Asp Rich Fibrinogen-Binding, Bone Sialoprotein-Binding Protein C, allele from MW2 / MRSA252 / RF122 Ser-Asp Rich Fibrinogen-Binding, Bone Sialoprotein-Binding Protein C, allele from other than MRSA252 / RF122 Ser-Asp Rich Fibrinogen-Binding, Bone Sialoprotein-Binding Protein D Ser-Asp Rich Fibrinogen-Binding, Bone Sialoprotein-Binding Protein D, allele from MU50 Ser-Asp Rich Fibrinogen-Binding, Bone Sialoprotein-Binding Protein D, allele from Other Ser-Asp Rich Fibrinogen-Binding, Bone Sialoprotein-Binding Protein D, allele from Other Than MRSA252 / RF122 Willebrand Factor - Binding Protein, allele from COL / MW2 Willebrand Factor - Binding Protein, allele from MRSA252 Willebrand Factor - Binding Protein, allele from MU50 Willebrand Factor - Binding Protein, allele from RF122 S. aureus Surface Protein G, allele from COL / MU50 S. aureus Surface Protein G, allele from MW2 S. aureus Surface Protein G, allele from other than MRSA252 and RF122 Immunevasion & Misc.
Gene/Probe
Explanation
Immunodominant Antigen B, allele from MRSA252 Probable Lysylphosphatidylglycerol Synthetase (Defensin Resistance) Lysylphosphatidylglycerol Synthetase (Defensin Resistance), allele from COL/MW2 Lysylphosphatidylglycerol Synthetase (Defensin Resistance), allele from MU50/MRSA252 Heme/Transferrin-Binding Protein, allele from MRSA252 Heme/Transferrin-Binding Protein, allele from OtherThanMRSA252 Putative Transporter Protein, allele from RF122 Site-specific Deoxyribonuclease Subunit Type 1, allele from RF122 Site-specific Deoxyribonuclease Subunit Type 2, allele from ST5 / ST8 Site-specific Deoxyribonuclease Subunit Type 2, allele from MW2 / 476 Site-specific Deoxyribonuclease Subunit Type 2, allele from FR122 Site-specific Deoxyribonuclease Subunit Type 2, allele from MRSA252 Site-specific Deoxyribonuclease Subunit Type 3, allele from any other than MRSA252 / RF122 Site-specific Deoxyribonuclease Subunit Type 3, allele from ST8 / ST1 / RF122 Site-specific Deoxyribonuclease Subunit Type 3, allele from Mu50 / N315 Site-specific Deoxyribonuclease Subunit Type 3, allele from CC51 / MRSA252 Site-specific Deoxyribonuclease Subunit Type 3, allele from MRSA252 Site-specific Deoxyribonuclease Subunit Type X, allele from CC25 Site-specific Deoxyribonuclease Subunit Type X, allele from CC15 Site-specific Deoxyribonuclease Subunit Type X, allele from etD Hyalunorate Lyase A1, alleles from MRSA252/RF122 and Hyalunorate Lyase A2, all alleles Hyalunorate Lyase A1, alleles from MRSA252/RF122 and Hyalunorate Lyase A2, all alleles Hyaluronate Lyase A2, any other allele than MRSA252 Hyaluronate Lyase A2_COL/USA300/NCTC8325 Hyaluronate Lyase A2, any other allele than COL/USA300/NCTC8325 set / ssl Genes
Explanation
Staphylococcal Superantigen-Like Protein C Staphylococcal Superantigen-Like Protein 6 /SSL1, allele from COL / SCOL468 Staphylococcal Superantigen-Like Protein 6 /SSL1, allele from Mu50 / SAV0422 Staphylococcal Superantigen-Like Protein 6 /SSL1, allele from MW2 / MW0382 Staphylococcal Superantigen-Like Protein 6 /SSL1, allele from SAR0422-MRSA252 Staphylococcal Superantigen-Like Protein 6 /SSL1, any other allele Staphylococcal Superantigen-Like Protein 6 /SSL1 - RF122 Staphylococcal Superantigen-Like Protein 7 /SSL2 Staphylococcal Superantigen-Like Protein 8 /SSL3 Staphylococcal Superantigen-Like Protein 8 /SSL3, allele from MRSA252-SAR0424 Staphylococcal Superantigen-Like Protein 9 /SSL4 Staphylococcal Superantigen-Like Protein 9 /SSL4, allele from MRSA252-SAR0425 Staphylococcal Superantigen-Like Protein 3 /SSL5 Staphylococcal Superantigen-Like Protein 3 /SSL5, allele from RF122 Staphylococcal Superantigen-Like Protein 3 /SSL5, allele from MRSA252 Staphylococcal Superantigen-Like Protein 21 /SSL6 Staphylococcal Superantigen-Like Protein 21 /SSL6, allele from NCTC8325 / MW2 Staphylococcal Superantigen-Like Protein 1 /SSL7 Staphylococcal Superantigen-Like Protein 1 /SSL7, allele from MRSA252 Staphylococcal Superantigen-Like Protein 1 /SSL7, allele from AF188836 Staphylococcal Superantigen-Like Protein 12 /SSL8 Staphylococcal Superantigen-Like Protein 5 /SSL9 Staphylococcal Superantigen-Like Protein 5 /SSL9, allele from MRSA252 Staphylococcal Superantigen-Like Protein 4 /SSL10 Staphylococcal Superantigen-Like Protein 4 /SSL10, allele from RF122 Staphylococcal Superantigen-Like Protein 4 /SSL10, allele from MRSA252 Staphylococcal Superantigen-Like Protein 2 /SSL11, allele from COL Staphylococcal Superantigen-Like Protein 2 /SSL11, allele from Mu50 / N315 Staphylococcal Superantigen-Like Protein 2 /SSL11, allele from MW2/MSSA476 Staphylococcal Superantigen-Like Protein 2 /SSL11, allele from MRSA252 Staphylococcal Superantigen-Like Protein B3 Staphylococcal Superantigen-Like Protein B3, allele from MRSA252 Staphylococcal Superantigen-Like Protein B2 Staphylococcal Superantigen-Like Protein B2, allele from MRSA252 Staphylococcal Superantigen-Like Protein B1

Source: http://spiral.univ-lyon1.fr/files_m/M1681/Files/583363_1746.pdf